PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.V94FJ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 541aa MW: 61014.2 Da PI: 5.8203

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.V94FJ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	476	527	4	47
S-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 WT+eE+++l ++v ++ ++ W++I + k+R++ ++k++w++ Aradu.V94FJ 476 WTAEEEKILQEGVLRFSKEnqriPWNRILEFGRhvfdKTRSPIDLKDKWRNI 527 ***************99******9998***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	6.42E-7	119	174	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.3E-7	120	170	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE pattern	PS01359	0	123	166	IPR019786	Zinc finger, PHD-type, conserved site
SMART	SM00717	0.0073	472	530	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-6	475	529	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.04E-8	476	532	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.47	476	528	IPR017877	Myb-like domain
CDD	cd11660	1.46E-10	476	529	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MRIKTRGGRR RLSCSADPPS PITKQDEYVA AELEISHGGG GDDAKDAPMV DCIDQHYNEN 60 HLDVLNHEQD KNCATEFETS HGGGDDDNVK DVLTVECIDQ HYNENPLDIL DHEDIDFLDK 120 SICLCCNKRG GVLVCSGSGC PVGLHPKCIN SEPKFDDLGK FYCPYCWYSR NVNMNPELKE 180 RIFSAKNALL GLSDKDVVMN DRLVKTKSAD KRKEPDDGGG IPLSSDGRQG TDEVGAQLLQ 240 PKVDLPIKLQ KDASVQCDIA LEDQAYSDGD FRSCGEEVMP VDINLVEGSL DQDKFDRPGK 300 VEKSLELKES FETGNSRLNK EDVHERIING REEGGHLDAL HLGKHIEGHS KDIAFAQGTQ 360 ESSVKSGDKG RKTGKEKIPL KENEESAIGS SVNETNNSDS DAISGRSCCS KRKIQKTEYP 420 QDVYKKPLLQ GNNFKEEKGS DINEEVTSCR FRRRSQSSQK QEIKKFPLAR RNMLIWTAEE 480 EKILQEGVLR FSKENQRIPW NRILEFGRHV FDKTRSPIDL KDKWRNIKKG SFRYFQIYQK 540 I

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MRIKTRGGRR RLSCSADPPS PITKQDEYVA AELEISHGGG GDDAKDAPMV DCIDQHYNEN  60
HLDVLNHEQD KNCATEFETS HGGGDDDNVK DVLTVECIDQ HYNENPLDIL DHEDIDFLDK  120
SICLCCNKRG GVLVCSGSGC PVGLHPKCIN SEPKFDDLGK FYCPYCWYSR NVNMNPELKE  180
RIFSAKNALL GLSDKDVVMN DRLVKTKSAD KRKEPDDGGG IPLSSDGRQG TDEVGAQLLQ  240
PKVDLPIKLQ KDASVQCDIA LEDQAYSDGD FRSCGEEVMP VDINLVEGSL DQDKFDRPGK  300
VEKSLELKES FETGNSRLNK EDVHERIING REEGGHLDAL HLGKHIEGHS KDIAFAQGTQ  360
ESSVKSGDKG RKTGKEKIPL KENEESAIGS SVNETNNSDS DAISGRSCCS KRKIQKTEYP  420
QDVYKKPLLQ GNNFKEEKGS DINEEVTSCR FRRRSQSSQK QEIKKFPLAR RNMLIWTAEE  480
EKILQEGVLR FSKENQRIPW NRILEFGRHV FDKTRSPIDL KDKWRNIKKG SFRYFQIYQK  540
I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015971788.1	0.0	PREDICTED: uncharacterized protein LOC107495194

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12055	20	22